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Showing :
normalized counts
•
reset
1
vote
6
replies
2.6k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
7.8 years ago
GFM
▴ 20
2
votes
2
replies
1.9k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
7.8 years ago
Jane Merlevede
▴ 90
1
vote
2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
falk.zakrzewski
• 0
4
votes
2
replies
1.3k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
mark.ebbert
• 0
1
vote
4
replies
1.5k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 6.3 years ago by
Ryan C. Thompson
★ 7.9k • written 6.3 years ago by
Yahan
• 0
0
votes
14
replies
4.4k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
naets_matthias
• 0
4
votes
2
replies
7.8k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
JoannaF
▴ 10
1
vote
2
replies
1.1k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Radek
▴ 90
1
vote
3
replies
1.4k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 7.8 years ago by
Steve Lianoglou
★ 13k • written 7.8 years ago by
snamjoshi87
▴ 40
0
votes
2
replies
1.1k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 5.4 years ago by
Steve Lianoglou
★ 13k • written 5.4 years ago by
anaQ
• 0
2
votes
1
reply
1.0k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
6.6 years ago
salvocomplicazioni1
• 0
0
votes
0
replies
1.4k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.6 years ago
agdif
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma
by
Shaimaa Gamal
• 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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